MmuEX6028063 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152600700-152603748:-
Coord C1 exon
chr1:152603653-152603748
Coord A exon
chr1:152602386-152602513
Coord C2 exon
chr1:152600700-152600844
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTACTCTTTCTCTGATGTAGTTG
3' ss Score
7.2
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
ATTTATGGGCAAGTGATAAAGGAACGTACATCTGTGAAGCTGAGAACCAGTTTGGAAAAATACAGTCGCAGACAACAGTAACGGTGACAGGACTCG
Seq A exon
TTGCCCCACTTATTGGAATCAGCCCTTCCATGGCCAGCGTTATTGAAGGACAGCCTCTAACTCTGCCTTGTACTCTGTTGGCTGGAAATCCCATTCCAGAACGGCGGTGGATGAAGAACTCAGCCATG
Seq C2 exon
TTGGTACAAAATCCCTACATAACTGTGCGCAGCGATGGGAGCCTCCATATTGAAAGAGTTCGACTTCAGGATGGAGGCAAATACACTTGTGTGGCCAGTAATGTCGCTGGAACCAATAACAAAACAACCTCTGTGGCCGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(30.4=84.8)
A:
PF0767911=I-set=PU(45.5=93.0)
C2:
PF0767911=I-set=PD(52.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGCAAGTGATAAAGGAACGT
R:
CACGGCCACAGAGGTTGTTTT
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: