BtaEX6070473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68470566-68473351:+
Coord C1 exon
chr16:68470566-68470661
Coord A exon
chr16:68471757-68471884
Coord C2 exon
chr16:68473207-68473351
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCTCTCTGATTTAGTCG
3' ss Score
8.66
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACTTATGGGCAAGTGATAAAGGAACATACATTTGTGAAGCAGAAAACCAGTTTGGAAAGATCCAGTCCCAGACAACAGTAACAGTGACAGGACTTG
Seq A exon
TCGCTCCACTCATTGGAATCAGCCCCCCAGTGACCAGTGTAATTGAAGGACAGCAGCTTACTTTGCCTTGTGCTCTACTGGCTGGAAATCCTATTCCAGAACGTCGGTGGATTAAGAATTCAGCCATG
Seq C2 exon
TTGGTCCAAAACCCTTACATCACTGTACGCAGTGACGGGAGTCTCCATATTGAAAGAGTCCGCTTGCAGGATGGAGGCGAGTATACTTGTGTGGCCAGTAATGTTGCCGGAATCACCAACAAAACTACCACTGTGGACGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'20-28,'20-27,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(30.4=84.8)
A:
PF0767911=I-set=PU(45.5=93.0)
C2:
PF0767911=I-set=PD(52.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAAGTGATAAAGGAACA
R:
CATGCACGTCCACAGTGGTAG
Band lengths:
236-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]