RnoEX0042126 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68119175-68124629:-
Coord C1 exon
chr13:68124534-68124629
Coord A exon
chr13:68123228-68123356
Coord C2 exon
chr13:68119175-68119319
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTGGTCTTTCTCTGATGTAGTTG
3' ss Score
6.97
5' ss Seq
ATGGTTAAT
5' ss Score
1.23
Exon sequences
Seq C1 exon
ATTTATGGGCAAGTGATAAAGGAACGTACATCTGTGAAGCAGAAAACCAGTTTGGAAAAATACAGTCGCAGACAACAGTAACAGTGACAGGACTTG
Seq A exon
TTGCCCCACTTATTGGAATCAGCCCTTCCAAAGCCAGTGTGATTGAAGGACAGCCAACTACCTTGCCTTTGTACTCTGTTGGCTGGAAATCCCATTCCAGAACGGCGGTGGATGAAGAACTCAGCCATG
Seq C2 exon
TTGGTACAAAATCCCTACATAACTGTGCGCAGCGATGGGAGCCTCCATATTGAAAGAGTTCGACTTCAGGATGGAGGCGAATATACTTGTGTGGCCAGTAATGTTGCTGGAACCAATAACAAAACAACCTCTGTAGCCGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.029
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(30.4=84.8)
A:
PF0767911=I-set=FE(21.6=100)
C2:
PF0767911=I-set=PD(52.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAAGTGATAAAGGAACGT
R:
CATGCACGGCTACAGAGGTTG
Band lengths:
236-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]