MmuEX6030964 @ mm10
Exon Skipping
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6317604-6320141:+
Coord C1 exon
chr19:6317604-6317685
Coord A exon
chr19:6318358-6318574
Coord C2 exon
chr19:6320079-6320141
Length
217 bp
Sequences
Splice sites
3' ss Seq
GCCTGACTCCCTGTCCACAGGTG
3' ss Score
10.88
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG
Seq A exon
GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG
Seq C2 exon
ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-'41-52,'41-49,43-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCCAGTTCTCAGCCA
R:
CATTGCTGTGAAGATGGATCAC
Band lengths:
144-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types