BtaEX6103274 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43681780-43685419:-
Coord C1 exon
chr29:43685338-43685419
Coord A exon
chr29:43684535-43684751
Coord C2 exon
chr29:43681780-43683681
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCTCTCTGCCCGTAGGTG
3' ss Score
13.86
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGACCCCCAGTTCTCAGCCGCCCCTGTCCTGGCCCCTGATGTTATCCATGCCCAATCCAAGGACCTGCCTCGCATCTTTAGG
Seq A exon
GTGACGGCCTCTCAGCTGACTGTGCCGCCTGCCACATGCACCGTGCTGCTGCTGGCGGAGAGTGAGGGCGAGCGGGAGCGCTGGCTGCAGGTGCTGAGCGAGCTGCAACGGCTGCTGCTGGACGCGCGGCCCTGGCCCCGGCCCGTGTACACCCTCAAGGAGGCCTACGACAACGGGCTGCCGCTGCTGCCGCACACGCTCTGCGCCGCCATCGTTG
Seq C2 exon
ACCAGGAACGGCTTGCTCTGGGCACCGAGGAAGGGCTGTTTGTGATCCATCTGCACAGTAACGGTACCCGCCGGCCGGGCCAGGGTGGGCTTGGGTGGAGTCAGCCCCCAGGGACAGAGGAGGCTGGGCCCCGGGCGCCCCTCACCCACCTGCTGGTGACACTCTCCCTCGCCAACCCCGCAGACATCTTCCAGGTGGGCGAGTGCCGGCGGGTGCAGCGGCTGGCCGTGAGCCCTGCTGCGGGCCTTCTGGTCGCGCTGTGTGGCCGAGGCCCCAGCGTGCGCCTCTTTGCCCTGGCAGAGCTGGAGAACGTGGAGGCAGCCAGCACCAAGATCCCCGAGTCTCGAGGCTGCCAGGCCCTGGCGGCCGGGCGCATCCTGCAGGCCCGCACCCCCGTGCTCTGTGTGGCGGTCAAGCGCCAGGTGCTCTGCTACCAGCTGGGCCCAGGTCCAGGGCCCTGGCAGCGCCGCATCCGTGAGCTGCAGGCACCAGCGCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'30-39,'30-37,33-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=PD(97.8=80.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCAATCCAAGGACCTG
R:
CACACAGCGCGACCAGAAG
Band lengths:
300-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]