RnoEX6006284 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221684864-221688013:+
Coord C1 exon
chr1:221684864-221684945
Coord A exon
chr1:221685988-221686204
Coord C2 exon
chr1:221687951-221688013
Length
217 bp
Sequences
Splice sites
3' ss Seq
GTCTGACTCCCTGTCCACAGGTG
3' ss Score
11.08
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGATCCCCAGTTCTCAGCCACCCCTGTCTTAGCTCCAGATGTCATCCATGCCCAATCCAAGGACCTGCCACGCATCTTTAGG
Seq A exon
GTGACAGCCTCCCAGCTGACAGTGCCACCATCCACATGTACTGTGCTGCTGCTGGCAGAGAACGAGGGGGAGCGGGAGCGTTGGCTTCAGGTGCTAAGTGAGCTGCAGCGGCTGCTCCTGGACGCACGCCCAAGGCCCCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGGACTGCCGCTGCTGCCTCATACGCTCTGTGCTGCTATCATTG
Seq C2 exon
ACCGAGAGCGTCTTGCCCTGGGCACTGAGGAGGGCTTGTTTGTGATCCATCTTCACAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCAGTTCTCAGCCA
R:
CATTGCTGTGAAGATGGATCAC
Band lengths:
145-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]