MmuEX6039318 @ mm9
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:127127786-127129463:+
Coord C1 exon
chr8:127127786-127127863
Coord A exon
chr8:127128090-127128250
Coord C2 exon
chr8:127129306-127129463
Length
161 bp
Sequences
Splice sites
3' ss Seq
CACCCTTCCCTCTGTCGCAGGAT
3' ss Score
10.87
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
CTCTCCTGAGTGGCGCTCTGTGGACCTGGAGGAGCAGAAGCGCCTGGGCCACACTGCCCTTGATGACGGGGAGTTCTG
Seq A exon
GATGGCATTCAAAGACTTCAAGATCCATTTTGACAAAGTGGAGATCTGCAACCTCACACCTGATGCCCTGGAGGACAGCGCCCTCCACAGGTGGGAGGTGACCATCCACCAAGGAAGCTGGGTCCGTGGCTCCACTGCTGGTGGCTGTCGCAACTTCCTGG
Seq C2 exon
ACACCTTCTGGACCAACCCTCAGATAAAGCTGTCCCTGACCGAGAGGGACGAGGGCCAGGAGGGCTGCACTTTCCTAGCAGCCTTGATGCAGAAAGACCGCAGGAGGCTCAAGAGGTTTGGCGCCAACATGCTGACCATTGGCTACGCCATTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.8=100)
A:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.3=43.6)
C2:
PF0106717=Calpain_III=FE(35.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGAGTGGCGCTCT
R:
CGTAGCCAATGGTCAGCATGT
Band lengths:
225-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: