GgaEX6030253 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39826521-39831522:+
Coord C1 exon
chr3:39826521-39826598
Coord A exon
chr3:39830527-39830687
Coord C2 exon
chr3:39831365-39831522
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTCCCATGTCTTCCACTCAGGAT
3' ss Score
9.17
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
CTCTCTAGAGTGGCGTTTGGTCAGCCCATCGGAGCAGAAGCGCTTGGCTCAGACAGCACTGGATGATGGAGAATTCTG
Seq A exon
GATGAAATTTGAAGATTTCAAAGTGCATTTTGATAAGGTTGAGATCTGCAACCTGACTCCAGATTCCCTGGAAGACAACACTACCCAAAAGTGGGAGGTGACCATCCATGAGGGGAGCTGGGTCCGGGGATCCACTGCAGGAGGATGCAGAAATTTTCTAG
Seq C2 exon
ACACTTTCTGGACAAATCCACAAATCAAGCTGCATCTGACAGAGAAAGACGATGGTCAAGATGACTGCACGTTCATAGCAGCACTGATGCAAAAGGATCGCCGTAAACTCAGGAAGCTTGGTGCTGAAATGCTAAGCATCGGCTACTCCATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.8=100)
A:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.3=43.6)
C2:
PF0106717=Calpain_III=FE(35.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTAGAGTGGCGTTTGGTCA
R:
TCATAAATGGAGTAGCCGATGC
Band lengths:
234-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]