BtaEX6052764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37869854-37874460:+
Coord C1 exon
chr10:37869854-37869931
Coord A exon
chr10:37872761-37872921
Coord C2 exon
chr10:37874291-37874460
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTCTAACCTCTCAGGAT
3' ss Score
9.51
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGGAAGGACTGGAGCTATGTGGACAAGGACGAGAAGGCCCGTTTGCAGCACCAGGTCACTGAGGATGGAGAGTTCTG
Seq A exon
GATGTCCTACGATGATTTTATCTACCATTTCACAAAGCTGGAGATCTGCAACCTCACAGCTGATGCCCTGGAGTCCGACAAGCTTCAGACTTGGACAGTGTCCGTGAATGAGGGCCGCTGGGTGAGGGGCTGCTCTGCCGGAGGCTGCCGCAACTTCCCAG
Seq C2 exon
ACACTTTCTGGACCAACCCACAGTACCGTCTGAAGCTCCTAGAGGAGGACGACGACCCCGATGATTCCGAGGTGATCTGTAGTTTCCTGGTGGCTCTGATGCAGAAGAACCGGAGGAAGGACCGGAAGCTGGGGGCTAACCTCTTCACCATCGGTTTCGCCATCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'15-15,'15-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(17.6=100)
A:
PF0064816=Peptidase_C2=PD(12.8=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
C2:
PF0106717=Calpain_III=FE(36.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTGGAGCTATGTGGACA
R:
TCGTAGATGGCGAAACCGATG
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]