MmuEX6104185 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120490954-120494941:+
Coord C1 exon
chr2:120490954-120491031
Coord A exon
chr2:120491794-120491954
Coord C2 exon
chr2:120494772-120494941
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTCAACCTCTCAGGAT
3' ss Score
8.64
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
TTGGAAGGACTGGAGCTTTGTAGACAAAGATGAGAAGGCCCGTCTACAGCACCAGGTTACTGAGGATGGAGAGTTCTG
Seq A exon
GATGTCATATGATGACTTCGTCTACCATTTCACGAAGCTGGAGATCTGCAACCTCACAGCTGACGCCCTGGAGTCCGATAAGCTTCAGACCTGGACGGTGTCTGTAAACGAGGGCCGCTGGGTGAGGGGCTGTTCTGCTGGAGGCTGCCGAAACTTCCCAG
Seq C2 exon
ACACTTTCTGGACCAACCCGCAGTACCGTCTCAAGCTTCTGGAGGAAGACGATGACCCTGAGGACTCTGAGGTAATCTGCAGCTTCCTCGTGGCTCTGATGCAGAAGAACCGGCGCAAGGACCGGAAGCTGGGGGCCAACCTCTTCACTATTGGCTTCGCCATCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'32-23,'32-22,35-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(17.6=100)
A:
PF0064816=Peptidase_C2=PD(12.8=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
C2:
PF0106717=Calpain_III=FE(36.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAGGACTGGAGCTTTGT
R:
AGCCAATAGTGAAGAGGTTGGC
Band lengths:
234-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types