RnoEX6018560 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112263883-112267704:+
Coord C1 exon
chr3:112263883-112263960
Coord A exon
chr3:112264707-112264867
Coord C2 exon
chr3:112267535-112267704
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTTTCAACCCTCAGGAT
3' ss Score
11.02
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
TTGGAAGGACTGGAGCTTTGTGGACAAAGACGAGAAGGCCCGTCTGCAGCACCAGGTCACCGAGGATGGAGAGTTCTG
Seq A exon
GATGTCATATGATGACTTTGTCTACCATTTCACAAAGCTGGAGATCTGCAACCTCACAGCTGATGCCCTGGAGTCCGATAAGCTTCAGACCTGGACAGTGTCTGTAAATGAGGGCCGCTGGGTGAGGGGCTGTTCTGCTGGAGGCTGCCGGAACTTCCCAG
Seq C2 exon
ACACTTTCTGGACCAACCCGCAGTACCGTCTCAAGCTCCTGGAGGAGGATGATGACCCTGATGACTCTGAGGTGATTTGCAGCTTCCTCGTGGCTCTGATGCAGAAAAATCGGCGCAAGGACCGGAAGCTGGGGGCCAACCTCTTCACCATTGGCTTCGCTATCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'2-19,'2-13,13-19=AN
Average complexity
A_C2
Mappability confidence:
95%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(17.6=100)
A:
PF0064816=Peptidase_C2=PD(12.8=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
C2:
PF0106717=Calpain_III=FE(36.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]