RnoINT0029057 @ rn6
Intron Retention
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112264707-112267704:+
Coord C1 exon
chr3:112264707-112264867
Coord A exon
chr3:112264868-112267534
Coord C2 exon
chr3:112267535-112267704
Length
2667 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
TTTCCTTTCTCGGGACACAGACA
3' ss Score
5.86
Exon sequences
Seq C1 exon
GATGTCATATGATGACTTTGTCTACCATTTCACAAAGCTGGAGATCTGCAACCTCACAGCTGATGCCCTGGAGTCCGATAAGCTTCAGACCTGGACAGTGTCTGTAAATGAGGGCCGCTGGGTGAGGGGCTGTTCTGCTGGAGGCTGCCGGAACTTCCCAG
Seq A exon
GTGGGAGATCCTCCGGATGGGGGAAGGTCTAGGCAGAACTCATTCCAGGCAGAGTAATATTAGCTATCAGTTATTGAGCCCATACTAATCTTTTTTTTAAACTTTATCTGCATTTATTTTCTGCTGAATTTATTCCCCTGCCATGAGTTTTTGTTTCTTCAGTCTCTTCTGGGATATCTTTTTCTTCCATGCAACCTCCTCTTCTGACTTTGGAACAGTCTGTTCCTTCTCAGTGAGGAGCATCTCAGTGTGGCAGGGAGAGCTCACGGATGGGTTAAAGCGGCGGTGAGTGCTGTAGGTCTGTCTGCAGCCGTGAGCGCTGTAGGTCCGTCTGCGTATCTTAGGTGCCGTGCTCACCCGCCTGTGTTCAATGACAGAGAATCTACGTCTAAGCCCTTAGTCCAGCATTACTCTCTGCATTGGTAAGCATGTGCAGCAAAAATTCAGCTCTCTGTTTTGGCCGCCATCCCTGTGCCCAGCCCCACTGTTTGGCCTGGGTGCACGTACCGACTCCACCATTATACCGCCGGAATGGCACACAAGGCTTCGTTGAAGTGACCTCCTTCAGATACTTGGTGGCTTTGGGGATATGCTTACCCTTGATGACCTGGCCAGTTTCCCGGGTGTTCTTAAAGTGAACACGAAAGTTTGAACCTCTTCGTGTTCTTCATGATTCGCATGGTTTTGCGGGGTTCTCCGGGTCAAGAGAGTAGCGGACCATCTTCACAGGTCACCTCTGGCCGCTTACAGGAAGAGCCAGCCTGTGCTAGTCTTGAGGGAGGCACCGTCTTATTGAAGCCTCCTCATTTAAGGAAGGAAACATGCTGAGGAATCTCCCACGGGGAGCTAGCAAGTCCCTGCTTCCTCTGCTGGCAGCAAATACTGAGGCAGGGAACTGTCAGGACACCGTGTCAGTCCTGCTGAAGGTTTATTTGAGGACCTGAGAGAGATGCCGAATGCATGTCCAAGTCTGGCTTCAGAGATGGAGGGAGGGTTCAGATTTAGGGAAGGAATAATGAGTAATACCAAGGGTCCCAGCACAATGACCTGGGCAGATGTGTCAATATTGCAATATAAATTACTCAGAACAAAAGCTGGTGTGTTGCTTTTTGTGTGGTTGGCTGTGAGTTACAGTAAGGGGAGTTTAGTTTATGACATGAGAAGTTTGAGGTACATATTGACTGCCATGGTAAAGATTTGTAATAGAGAATTGAAGTCGTCGACATTTGAGAGTGGACTTAGTTATATGATAAAAACTCAGTGAAGATGACAGAGAGATGGTTCAGCCTATAAAGAACTTTCCTGATAAACTGAGTCTGGATCCCCCAAACCCCCACAAAAGTGAGGTTCACTCAGTTGTGTGTCCATGACCCCAGTGATGGGAAATGGAGATAGAATCCCAGAAGCTCAGGGGCCGTTGGCCCAGCATCCACATCAGCAGACAGAGACCCCCAAACAAGGTGGAAGGACGGGCCTGATGCTCAACATTGCCCTTTGACCTCCATGTGCATACCATGCCACACATGCACCTGCTTTCACACACACACACACACACACACACACACACACACACACACACACACACACCATATACACAAAAAACTCAGTATTTTATGATGAAAAAAGTGAGTAAATAAATGAGAAGAAAAGGGTGGTAGAGAGCAGGGAATCAGACAGGAAACTGAGCTCAGACATATAGCTCAGGTATCATTGGAATATAGGGGTCAGTGAGAAAGCAGAAGTCACACTAGGCTGTGGTGGGGCACTCCTTTAAACCCAGCACCTGGAAGGCAGAGGCAGGCAGATCTCTGTTTGAAGCCAGCTTGATCTTCAGAGAGAGTTCCAGGACAGCCAGGGAAACACAGAGAAACTCTGTTTCTGGAAAGAAAAGAGAAGGGAGGGGAAGGGAAGGGAAAGGAAGGGAAGGGAAGGGAAGGGGACACACACACACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAATAAAGCATATATGGTGGCATATGCCTCTGATCCCAGCATGAAGGATGTAGTCAGAAGAATTGTCTCAAAATCAAAAGAAAATAAATTTATTTATTTTAAAACAGTTCATTAGTGCACATGTAAGCTTACCATCTATTTGTATGTTAGTGAGGTGGATGGACTTGTTCGTTTTGCACAAAAATTTAAATCTTGTGGAGCGTTAGACACCGTAGGAGACAGAGCGTCTTCAACATTTTTTTGAATTGATGGATATTTTGATGTCATAACTATCAATCTCGAGAATTCCATTTATATAAATAAGTGGTATGAATCATCAGCAGTAACATAGGGCCATTTCAGAAATTTCTGGGAATTCTGCCCTAATTCTAAGTCAAAAATCTATTTAACAGGAACTGGCAAAATGGCTCAATGGTAAAGAGCTCTTACTGCTCTTGCAGAGGACCTCGGTTTGGTTCCCAGCAACCACATGGAGGCCCTCTTCTGACCTCCATGGGCACCATACACGCATGTGGTACACAGACATAGGCAAAACACCCACACACACATAAATACAAATCCCATAGGGAATAGAGGAGACTGGTTCCCTGTCTCACTTTCCTTCCTGCCCTTTCTCCAAGAGGTGTATCTGAACGTACATTTCCTTTCTCGGGACACAG
Seq C2 exon
ACACTTTCTGGACCAACCCGCAGTACCGTCTCAAGCTCCTGGAGGAGGATGATGACCCTGATGACTCTGAGGTGATTTGCAGCTTCCTCGTGGCTCTGATGCAGAAAAATCGGCGCAAGGACCGGAAGCTGGGGGCCAACCTCTTCACCATTGGCTTCGCTATCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609:ENSRNOT00000011761:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(12.8=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
A:
NA
C2:
PF0106717=Calpain_III=FE(36.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]