MmuEX6040096 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27644487-27649951:+
Coord C1 exon
chr14:27644487-27644618
Coord A exon
chr14:27646970-27647059
Coord C2 exon
chr14:27649811-27649951
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCATAAAATTTATTTGTAGATA
3' ss Score
6.29
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CCAGCTGATATTACAATTGTAAAATCAATGAAGAATCCTCCAGCAGGTGTTAAATTAGTCATGGCTGCTGTTTGTGTCATGAAAGATATAAAACCAGAAAAGATTTCAGATCCTTCAGGAACGGGAGGCAAG
Seq A exon
ATATTTGATTACTGGGGACCTAGCAAAAAACTCCTGGGAGATATGAATTTTCTCCGAGATTTGCGGGAGTATGACAAGGACAACATCCCA
Seq C2 exon
GTGGCTGTTATGCAGAAGATTCGCAGTGAATATTTGACAAACCCTGAATTTGATCCCCCCAAGGTCGCTAAAGCGTCTTCTGCCGCAGAGGGTCTGTGCAAATGGATCATGGCCATGGAAGTGTATGACAGAGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(17.0=95.5)
A:
PF127772=MT=FE(11.7=100)
C2:
PF127772=MT=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCTGTTTGTGTCATGA
R:
TGATCCATTTGCACAGACCCT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: