GgaEX6010298 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8657254-8659632:-
Coord C1 exon
chr12:8659501-8659632
Coord A exon
chr12:8658959-8659048
Coord C2 exon
chr12:8657254-8657394
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTCCTACTGTGTTTTGTAGATC
3' ss Score
9.95
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
CCTTCTGATATATCAATTGTTAAATCAATGAAGAATCCTCCATCTGGTGTCAAACTTGTCATGGCTGCTGTCTGTGTCATGAAAGACATAAAACCTGAAAAAATTTCAAATCCTGCAGGGACTGGAGGCAAG
Seq A exon
ATCTTGGATTACTGGACTCCAAGCAAGAAACTCCTTGGTGACATGAATTTCTTAAAGGATTTGAAAGAGTATGACAAGGACAATATTCCA
Seq C2 exon
GCAGCTGTCATGCAGAAGATTCGGGCTGAATACCTGACTAATCCAGAGTTTGATCCACCTAAAGTGGCTAAAGCTTCCTCAGCAGCAGAGGGTTTATGTAAATGGATTATGGCAATGGAGGTGTATGACAGGGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'57-64,'57-63,58-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=FE(8.3=100)
C2:
PF127772=MT=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGCTGTCTGTGTCATG
R:
CATAAACCCTCTGCTGCTGAGG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]