BtaEX6094428 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44322032-44325305:+
Coord C1 exon
chr22:44322032-44322163
Coord A exon
chr22:44324462-44324551
Coord C2 exon
chr22:44325165-44325305
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTGTAAATTTTATTTATAGATA
3' ss Score
7.1
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCAGCTGACATTACGATTGTGAAGTCAATGAAGAATCCTCCATCTGGTGTTAAACTAGTTATGGCTGCTGTTTGTGTTATGAAAGATATAAAACCAGAAAAAATTTCGGATCCTTCAGGAACTGGAGGCAAG
Seq A exon
ATATTAGATTACTGGGGACCTAGCAAAAAACTTCTGGGAGATATGAATTTCTTAAGAGATTTGAGAGAATATGACAAGGACAATATTCCG
Seq C2 exon
GTGACTGTTATGCAGAAGATTCGTGGTGAATACTTAACAAACCCTGAATTTGATCCTCCTAAGGTTGCTAAAGCTTCCTCTGCAGCTGAGGGTCTGTGTAAGTGGATCATGGCTATGGAAGTGTATGACAGAGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'49-50,'49-49,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=FE(8.3=100)
C2:
PF127772=MT=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCTGTTTGTGTTATGA
R:
CTTACACAGACCCTCAGCTGC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]