MmuEX6040096 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26831301-26836765:+
Coord C1 exon
chr14:26831301-26831432
Coord A exon
chr14:26833784-26833873
Coord C2 exon
chr14:26836625-26836765
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCATAAAATTTATTTGTAGATA
3' ss Score
6.29
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CCAGCTGATATTACAATTGTAAAATCAATGAAGAATCCTCCAGCAGGTGTTAAATTAGTCATGGCTGCTGTTTGTGTCATGAAAGATATAAAACCAGAAAAGATTTCAGATCCTTCAGGAACGGGAGGCAAG
Seq A exon
ATATTTGATTACTGGGGACCTAGCAAAAAACTCCTGGGAGATATGAATTTTCTCCGAGATTTGCGGGAGTATGACAAGGACAACATCCCA
Seq C2 exon
GTGGCTGTTATGCAGAAGATTCGCAGTGAATATTTGACAAACCCTGAATTTGATCCCCCCAAGGTCGCTAAAGCGTCTTCTGCCGCAGAGGGTCTGTGCAAATGGATCATGGCCATGGAAGTGTATGACAGAGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'50-59,'50-49,51-59=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(17.0=95.5)
A:
PF127772=MT=FE(11.7=100)
C2:
PF127772=MT=FE(18.5=100),PF041569=IncA=PU(19.1=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCTGTTTGTGTCATGA
R:
TGATCCATTTGCACAGACCCT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types