RnoEX0028460 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2487617-2491721:+
Coord C1 exon
chr16:2487617-2487748
Coord A exon
chr16:2490437-2490526
Coord C2 exon
chr16:2491581-2491721
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCCTAAATTTCATTTGTAGATA
3' ss Score
8.95
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CCAGCCGATATTACAATTGTAAAATCAATGAAGAATCCTCCAGCTGGGGTTAAACTAGTCATGGCTGCTGTCTGCGTCATGAAAGATATAAAGCCAGAAAAGATTTCAGATCCTTCAGGAACTGGAGGCAAG
Seq A exon
ATATTTGATTACTGGGGACCTAGCAAAAAACTCCTGGGAGATATGAATTTTCTCCGAGATTTGAGGGAGTATGACAAGGAGAACATTCCA
Seq C2 exon
GTGGCTGTTATGCAGAAGATTCGTAGCGAATATTTGACGAACCCTGAATTTGATCCCCCTAAGGTCGCTAAAGCCTCTTCTGCTGCTGAGGGTCTGTGCAAGTGGATCATGGCTATGGAAGTGTATGACAGAGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'56-62,'56-61,57-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=FE(8.3=100)
C2:
PF127772=MT=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATCCTCCAGCTGGGGTT
R:
AGCGACCTTAGGGGGATCAAA
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]