DreEX6079839 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19599130-19599640:-
Coord C1 exon
chr23:19599509-19599640
Coord A exon
chr23:19599343-19599432
Coord C2 exon
chr23:19599130-19599270
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATGGTGTCTGTTCTAATAGATT
3' ss Score
7.24
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CCTGCTGACGTGACCATAGTGAAGGCAATGAAGAATCCTCCAGCAGGAGTCAAGCTGGTGATGGCAGCGGTGTGTGTCATGAAGGACATCAAACCAGAGAGGATCAATGATCCTTCAGGAACTGGACAGAAG
Seq A exon
ATTCTTGACTACTGGGGTCCAAGCAAAAAGCTGCTAGGGGACATGAATTTCCTCAGAGACTTGAAGGAATATGACAAAGATAACATCCCT
Seq C2 exon
GCTCAAGTGATGCATAAAATTCGTAGTGAGTACATGACCAACCCTGACTTTGACCCTACCAAAGTGGTCAAAGCCTCATCTGCAGCTGAGGGGCTTTGCAGATGGATAACTGCTATGGAGGTTTATGACAGAGTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'54-54,'54-53,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=FE(8.3=100)
C2:
PF127772=MT=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAAGCTGGTGATGGCAG
R:
AGCTGCAGATGAGGCTTTGAC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]