GgaEX6010298 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8904632-8907664:-
Coord C1 exon
chr12:8907533-8907664
Coord A exon
chr12:8906991-8907080
Coord C2 exon
chr12:8904632-8904772
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTCCTACTGTGTTTTGTAAATC
3' ss Score
1.2
5' ss Seq
CCAATAAGG
5' ss Score
-2.45
Exon sequences
Seq C1 exon
CCTTCTGATATATCAATTGTTAAATCAATGAAGAATCCTCCATCTGGTGTCAAACTTGTCATGGCTGCTGTCTGTGTCATGAAAGACATAAAACCTGAAAAAATTTCAAATCCTGCAGGGACTGGAGGCAAG
Seq A exon
ATCTTGGATTACTGGACTCCAAGCAAGAAACTCCTTGGTGACATGAATTTCTTAAAGGATTTGAAAGAGTATGACAAGGACAATATTCCA
Seq C2 exon
GCAGCTGTCATGCAGAAGATTCGGGCTGAATACCTGACTAATCCAGAGTTTGATCCACCTAAAGTGGCTAAAGCTTCCTCAGCAGCAGAGGGTTTATGTAAATGGATTATGGCAATGGAGGTGTATGACAGGGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'49-55,'49-54,50-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=FE(8.3=100)
C2:
PF127772=MT=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGCTGTCTGTGTCATG
R:
CATAAACCCTCTGCTGCTGAGG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]