HsaEX1011872 @ hg38
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57379158-57382393:-
Coord C1 exon
chr3:57382262-57382393
Coord A exon
chr3:57380278-57380367
Coord C2 exon
chr3:57379158-57379298
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCATAAATTTTATTTGTAGATA
3' ss Score
7.22
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CCAGCCGACATTACGATTGTGAAATCAATGAAGAATCCTCCATCTGGTGTTAAACTAGTTATGGCTGCTGTTTGTGTCATGAAAGATATAAAACCAGAAAAAATTTCAGATCCTTCAGGGACTGGAGGCAAG
Seq A exon
ATATTAGATTACTGGGGACCTAGCAAAAAACTTCTGGGAGATATGAATTTCTTAAGAGATTTGAAAGAATATGACAAGGACAACATTCCA
Seq C2 exon
GTGACTGTTATGCAGAAGATTCGTAGTGAATACTTAATGAACCCTGAATTTGATCCCCCTAAGGTTGCTAAAGCTTCTTCTGCAGCTGAGGGTCTGTGTAAGTGGATCATGGCCATGGAAGTGTACGACAGAGTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844_MULTIEX2-10/19=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=FE(8.3=100)
C2:
PF127772=MT=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCTGTTTGTGTCATGA
R:
CTTACACAGACCCTCAGCTGC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains