MmuEX6053546 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47412183-47418572:-
Coord C1 exon
chr15:47418485-47418572
Coord A exon
chr15:47417179-47417314
Coord C2 exon
chr15:47412183-47414156
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTATTCCACTAGGAC
3' ss Score
9.39
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTTCTGCTGAGCCTGATGGAGCTACTTATGTATTCCAAGGATTTATTAAAGGCAAAGATTATGGGCAATTTGGACTACAAAGACTAG
Seq A exon
GACTGAATACTTCAGAAGGGTCAAATTCTTCAAATCAGCCTCATGGTACAAATAGCAGTTCTGTGGCCATTGCGATACTTGTGCCTTTTTTTGCACTTATATTTGCAGGATTTGGGTTTTATCTTTACAAACAAAG
Seq C2 exon
GACTGCACCCAAAACACAGTACACAGGATGTTCTGTTCATGAAAATAACAATGGCCAAGCAGCCTTTGAGAACCCCATGTATGACACCAATGCCAAGTCTGTGGAGGGGAAGGCAGTACGATTCGACCCCAACTTGAACACAGTTTGCACAATGGTATAACACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGCACTTTTAGTTCACTGCTAAACAAAGCACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTTTTCATAAACTGGATCAAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGGAGTGCTTACTCACAGTTTATTTGCTTTTTTTAAAAAGGAGATTATTCTAAAACATAAACTTATTTGCATATATTGGAGGAGCATCCACTATCAGTATTTCTGTGCTTTATAAACTATATTAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'87-76,'87-75,88-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAGCCTGATGGAGCTA
R:
ACGTGTTGCCGTGTTATACCA
Band lengths:
257-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: