HsaEX6082026 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113235157-113243861:-
Coord C1 exon
chr8:113243774-113243861
Coord A exon
chr8:113240985-113241120
Coord C2 exon
chr8:113235157-113237159
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTTTATTTTGTAGGAC
3' ss Score
10.12
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTTCTGCTGAGCCTGATGGAGCTACTTATGTATTTCAAGGATTTATTCAAGGCAAAGATTATGGACAATTTGGCCTACAAAGACTGG
Seq A exon
GACTGAATATGTCAGAAGGTTCAAATTCTTCAAATCAACCTCATGGTACAAATAGTAGTTCTGTAGCCATTGCTATTCTTGTGCCTTTTTTTGCACTTATATTTGCAGGATTTGGATTTTATCTTTATAAACAAAG
Seq C2 exon
GACTGCACCTAAAACACAGTATACAGGATGTTCAGTTCATGAAAATAACAATGGCCAAGCAGCTTTTGAAAATCCCATGTATGACACCAACGCAAAGTCAGTGGAAGGGAAGGCGGTACGATTTGATCCCAACTTGAACACGGTTTGCACAATGGTATAACGAGGCAACCTTTGCCTTCTTCAGAAGCTTGGAAATCGACACACAAAACAGTGCACATTTAGTTCACTGCTAAACAAATTAAAGCACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATACAGAAGAGTGTTTTTTCATAAACTGGACCATAATTCTTCATGTTTACCATGGAGAGTTTTACAGAAATTTGGCTGCACTCTGAGAGTGCTTACTCACAGTTTATTTGCTTTTTTTAAAAAGGAGATTATTCTAAAATATAAACTTATTTGCATATATTGGAGGAGCATCCACTATCAGTATTTCTGTGCTTTATAAACTATATTAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'77-78,'77-77,78-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGCTGAGCCTGATGGA
R:
ACCATTGTGCAAACCGTGTTC
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)