GgaEX6022151 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132812344-132817505:-
Coord C1 exon
chr2:132817418-132817505
Coord A exon
chr2:132815758-132815893
Coord C2 exon
chr2:132812344-132814424
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTTATCCTTTTCAGGTC
3' ss Score
12.69
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTCTGCTGAACCTGATGGAGCTACGTATGTTTTTCAAGGATTCATCCAGGGTAAAGATTATGGGCAATTCGGACTTCAAAGATTAG
Seq A exon
GTCTAAATATGTCTGAAGGTTCAAATTCTTCTAATCAACCACATGGTACAAATAGTAGTTCAGTGGCAATTGCTATCCTTGTGCCTTTCTTTGCCCTCATATTTGCTGGTTTTGGCTTTTATCTTTATAAACAAAG
Seq C2 exon
GACTGCACCTAAAACACAATATACAGGATGCTCTGTACATGAAAATAATAATGGACAAGCTGCTTTTGAAAACCCCATGTATGACACAAATGCAAAGTCTGTGGAAGGGAAAGCGGTACGATTTGACCCCAACTTGAACACCGTTTGCACAATGGTATAATTTGGTAATGATATATCTTCAAAGTTTGAAAATCAAAACACAACACAGTGCACACATAGTTCACTGATTTAGGAAAAGAAAAAAATAAAGCACACTTTTCAGGATATAGTTGGTCACCTTTTCCTGAGGATGATATACAATAATGGGTTGTGGTTATTTTGTTTTGATTTTGTTTTTCATAAACTGGATCAAAAATTTTCTTCATGTTTACCATGGAGAGTTTTACAAAAAATCTGCTGCACTCCATGAGTGCTAACTCACAGTTTATTTGCTTTTTTAAAAAAGGAGGTTATTCTAAAACATAAAATGTATTTGCATATATTGGAGGAGCATCCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'77-81,'77-80,78-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTGAACCTGATGGAGC
R:
ACCATTGTGCAAACGGTGTTC
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]