DreEX6042892 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47596430-47602859:-
Coord C1 exon
chr16:47602772-47602859
Coord A exon
chr16:47601171-47601306
Coord C2 exon
chr16:47596430-47596589
Length
136 bp
Sequences
Splice sites
3' ss Seq
GACAATTTCCTGTCATACAGGTC
3' ss Score
8.3
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTCTGCTGACCATGAAGGAAACACATACTTGTTTCAAGGCTTTATACAAGGTAGAGACTACGGCCCATTTGGACTACAGAGACAAG
Seq A exon
GTCTGAACGTTCTGGAGCCCACCAGGAGCCCTGAGATCCCACCCAGAACCAACAGCAGCTCTGTGGCCATCGCGATTCTTGTGCCTTTCTTTGCCCTCATTTTTGCAGGCTTTGGCTTTTATCTTTATAAACAGAG
Seq C2 exon
GAAGTCTGATAAAGCAGAGTACAGCGGCTGCTCTGTGCATGAAAACAACAACGGTCAGGCTACATTCGAGAACCCCATGTACAACACCAACTCCAAATCCATCGAGGGAAAGGTTGTCCGCTTCGATCCCAATCTCAACACGGTTTGCACAATGGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'75-72,'75-71,76-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGCTGACCATGAAGGA
R:
CACACCATTGTGCAAACCGTG
Band lengths:
247-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]