RnoEX0003325 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86673993-86681806:-
Coord C1 exon
chr7:86681719-86681806
Coord A exon
chr7:86680285-86680420
Coord C2 exon
chr7:86673993-86675954
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTATTTCCATTAGGAC
3' ss Score
8.79
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTTCTGCTGAACCTGACGGAGCTACTTATGTATTCCAAGGATTTATTAAAGGCAAAGATTATGGGCAATTTGGACTACAAAGACTGG
Seq A exon
GACTGAATACTTCAGAAGGGTCAAATTCTTCAAATCAGCCTCATGGTACAAATAGTAGTTCCGTGGCCATTGCAATTCTTGTGCCTTTTTTTGCACTTATATTTGCAGGATTTGGGTTTTATCTTTACAAACAAAG
Seq C2 exon
GACTGCCCCCAAAACTCAGTACACAGGATGTTCTGTTCATGAAAATAACAATGGTCAAGCAGCCTTTGAGAATCCCATGTACGACACCAATGCCAAGTCTGTGGAGGGGAAGGCAGTTCGATTCGACCCCAACTTGAACACAGTTTGCACAATGGTATAACACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGCACTTTGAGTTCACTGCTAAACAAAGCACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTTTTCATAAACTGGATCGGACTCCGTCTTCATGCTTACCGTGGAGAGTTTTACAGAAATCGGGCTGCACTCTGCGAGTGCTCACTCACAGTTCATTCGCTTTTTTTAAAAAGGAGATTATTCTAAAACATAAACTTATTTGCATATATTGGAGGAGCATCCACTATCAGTATTTCTGTGCTTTATAAACTATATTAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'85-90,'85-89,86-90
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAACCTGACGGAGCTA
R:
ACGTGTTGCCGTGTTATACCA
Band lengths:
257-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]