BtaEX6062801 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54419031-54429251:+
Coord C1 exon
chr14:54419031-54419118
Coord A exon
chr14:54425066-54425201
Coord C2 exon
chr14:54429092-54429251
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTTTCCTTCTATAGGAC
3' ss Score
12.24
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTTCTGCTGAGCCTGATGGAGCTACTTATGTATTTCAAGGATTTATTCAGGGTAAAGATTATGGGCAATTTGGACTACAAAGACTAG
Seq A exon
GACTGAATATGTCAGAAGGCTCAAATTCTTCAAATCAACCTCATGGTACAAATAGTAGTTCCGTGGCCATTGCTATTCTGGTGCCTTTTTTTGCACTTATATTTGCAGGATTTGGATTTTATCTCTATAAACAAAG
Seq C2 exon
GACTGCACCCAAAACCCAGTATACAGGATGTTCAGTTCATGAAAATAACAATGGCCAAGCAGCTTTTGAAAATCCCATGTATGACACCAACACAAAGTCAGTGGAAGGGAAGGCAGTACGGTTCGATCCCAACTTGAACACAGTCTGCACAATGGTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'67-72,'67-71,68-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGCTGAGCCTGATGGA
R:
ACCATTGTGCAGACTGTGTTCA
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]