MmuEX6053546 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47580637-47587026:-
Coord C1 exon
chr15:47586939-47587026
Coord A exon
chr15:47585633-47585768
Coord C2 exon
chr15:47580637-47582610
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTATTCCACTAGGAC
3' ss Score
9.39
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTTCTGCTGAGCCTGATGGAGCTACTTATGTATTCCAAGGATTTATTAAAGGCAAAGATTATGGGCAATTTGGACTACAAAGACTAG
Seq A exon
GACTGAATACTTCAGAAGGGTCAAATTCTTCAAATCAGCCTCATGGTACAAATAGCAGTTCTGTGGCCATTGCGATACTTGTGCCTTTTTTTGCACTTATATTTGCAGGATTTGGGTTTTATCTTTACAAACAAAG
Seq C2 exon
GACTGCACCCAAAACACAGTACACAGGATGTTCTGTTCATGAAAATAACAATGGCCAAGCAGCCTTTGAGAACCCCATGTATGACACCAATGCCAAGTCTGTGGAGGGGAAGGCAGTACGATTCGACCCCAACTTGAACACAGTTTGCACAATGGTATAACACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGCACTTTTAGTTCACTGCTAAACAAAGCACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTTTTCATAAACTGGATCAAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGGAGTGCTTACTCACAGTTTATTTGCTTTTTTTAAAAAGGAGATTATTCTAAAACATAAACTTATTTGCATATATTGGAGGAGCATCCACTATCAGTATTTCTGTGCTTTATAAACTATATTAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'126-92,'126-91,127-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAGCCTGATGGAGCTA
R:
ACGTGTTGCCGTGTTATACCA
Band lengths:
257-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types