MmuEX6069090 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108972039-108972562:+
Coord C1 exon
chr9:108972039-108972074
Coord A exon
chr9:108972193-108972240
Coord C2 exon
chr9:108972527-108972562
Length
48 bp
Sequences
Splice sites
3' ss Seq
AGTCAATTTCTTGTCTCCAGGGC
3' ss Score
7.22
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGTGACCGTGGAGAGACTGGATCCAAAGGGGAACAG
Seq A exon
GGCCTTCCTGGAGAACGTGGCCTACGAGGAGAACCTGGGAGCTTGCCA
Seq C2 exon
AACGCGGAGCGTTTGCTGGAAACTGCTGGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'69-89,'69-86,78-89=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.0=100)
A:
PF0139113=Collagen=FE(24.6=100)
C2:
PF0139113=Collagen=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGTGGAGAGACTGGATC
R:
TTGATGCCAGCAGTTTCCAGC
Band lengths:
69-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types