DreEX6023287 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40224978-40225253:-
Coord C1 exon
chr6:40225218-40225253
Coord A exon
chr6:40225099-40225137
Coord C2 exon
chr6:40224978-40225013
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGAACTCTTTTGATTGCCAGGGT
3' ss Score
5.48
5' ss Seq
GCGGTTAGC
5' ss Score
0.94
Exon sequences
Seq C1 exon
GGTGAGCGAGGTCTGCCAGGCTTGAAAGGAGATGTG
Seq A exon
GGTGATCCAGGAGAGGATGGCAAACCAGGAACTTCAGCG
Seq C2 exon
GATGTGAAAAGAGCTCTGTCAGATTTTGGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'76-79,'76-78,77-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.6=100)
A:
PF0139113=Collagen=FE(20.3=100)
C2:
PF0139113=Collagen=PD(1.7=8.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCGAGGTCTGCCAG
R:
CTCAATGCCAAAATCTGACAGAGC
Band lengths:
72-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]