MmuEX6072507 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95163432-95167120:+
Coord C1 exon
chr3:95163432-95163521
Coord A exon
chr3:95164339-95164513
Coord C2 exon
chr3:95167006-95167120
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTCCTTACTCCAGGGC
3' ss Score
10.53
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGGCAGCCTGATGAGGGAAGAAGGGGAGAGCGGGGCACGTTCAGCCATTTCTTCTCACCCGTCCTTTCTATCCTTCGTTCAGCATAGGGG
Seq A exon
GGCCGGCACATGGGTGAGGGGGTACCCCCTGGGGCGTGAGCTGCCCCGCACAGGATGCCCCGTGCCCCCCACTCCATGCCCCTGCTGCTCCTGCTGCTGTTGCTGTCATCGCTCCCCCAAGCCCAGGCTGCCTTTCCCCAGGACCCCACCCCTCTGTTGACCTCTGACCTTCAAG
Seq C2 exon
GTGCCTCTCCATCATCCTGGTTCCGGGGCCTGGAGGACGATGCTGTGGCTGCGGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTTGTGGCTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777-'2-19,'2-9,13-19=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(11.0=35.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTGATGAGGGAAGAAG
R:
ACAAGCAAGGTCCGGTTCAAG
Band lengths:
194-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types