DreEX0065162 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30196932-30263790:+
Coord C1 exon
chr16:30196932-30197046
Coord A exon
chr16:30253437-30253633
Coord C2 exon
chr16:30263676-30263790
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTCAGGTG
3' ss Score
13.75
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TCTTTCTCAGGATCTAGAGTGAAAATCTCTTTTTTTGTTCCTGAAGTGTTGCCCGCCATCGACTCTTCGTGGACAACAGCGTTTCCACCACTGCTCATCTCCTGAAAGGATAACA
Seq A exon
GTGGTCTTCAGTCTACTCTGGGTCATGCTGTGTGGCTGAATTCTATGCTGTAGCTGAAATGAGGTTGGTGATTTTGGGGTCGCGGCCCCTTTTGGCCTTGACCCTCATGCTCACCCTCACCTGCCTAAAGCATCTGTGCCATGGTGCAACACCCTTTCCTCAGGATCTGGAACCCATCAGGACCGTTGGTAGTGAAC
Seq C2 exon
ACACCTACCTGTACCCCAGTTTCCAGGGGAACATGTCAGATAACGACACCGCCAGACTGGGCCTGGATTTTCAGAGGATGCTGCGGATTAACCACATGGTCTACATCGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'0-3,'0-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(3.6=38.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTCAGGATCTAGAGTGAAAA
R:
TGCAGCGATGTAGACCATGTG
Band lengths:
228-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]