MmuEX6074962 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3178155-3185874:+
Coord C1 exon
chr17:3178155-3178348
Coord A exon
chr17:3185064-3185164
Coord C2 exon
chr17:3185761-3185874
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTGTCCTGACAGTAT
3' ss Score
9.35
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTCACCAAGAAAACGAAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAGCACAGGAAGCGGTCTCGGTCCCACTCGAGAGAGAAAAAGAGAAAAGCCTCACGCTCCTACTCCAGTGAGCGCAGAGCCAGGGAAAGGGAGAAAGAGCGCCAGAAAAAGGGCTTGCCTCCTGTCAGGTCAAAAACACTAAGTG
Seq A exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAATTTGGACAAATTGAATCCATTAAT
Seq C2 exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGCATGGTTCATCGACAAGATTCATTTCGGGCTCTTCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'20-26,'20-25,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF086487=DUF1777=FE(66.3=100)
A:
PF086487=DUF1777=PD(17.3=50.0),PF0007617=RRM_1=PU(41.8=82.4)
C2:
PF0007617=RRM_1=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACGAAGGTCCAGGTCACG
R:
AGCCCGAAATGAATCTTGTCGA
Band lengths:
248-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: