HsaEX6050106 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155131149-155139726:+
Coord C1 exon
chr6:155131149-155131342
Coord A exon
chr6:155136850-155136950
Coord C2 exon
chr6:155139613-155139726
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTGTGTCTTGACAGTAT
3' ss Score
9.15
5' ss Seq
AATGCAAGT
5' ss Score
0.87
Exon sequences
Seq C1 exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGGTCTGGCTCTAGAAAGCGTAAACACAGAAAGCGATCACGCTCCCGCTCAAGAGAAAGAAAGAGGAAATCATCACGGTCGTATTCAAGTGAAAGGAGAGCCAGAGAAAGGGAGAAAGAACGACAGAAAAAGGGATTACCTCCAATTAGATCTAAAACACTAAGTG
Seq A exon
TATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAGCAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAAT
Seq C2 exon
ATGATTCCTCCCCGGGGCTGTGCTTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTGGATCATATAAAATTGGGTCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(47.4=100),PF086487=DUF1777=FE(69.1=100)
A:
PF064956=Transformer=FE(24.1=100),PF086487=DUF1777=PD(14.9=41.2),PF0007617=RRM_1=PU(41.8=82.4)
C2:
PF064956=Transformer=PD(7.3=26.3),PF0007617=RRM_1=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGTCTAGGTCACGGTCT
R:
AGCTCGAAATGCATCTTGTCGA
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)