DreEX0064312 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48854111-48857127:+
Coord C1 exon
chr17:48854111-48854304
Coord A exon
chr17:48854545-48854645
Coord C2 exon
chr17:48857014-48857127
Length
101 bp
Sequences
Splice sites
3' ss Seq
CATGCTGGTTGCTCTTTCAGTTT
3' ss Score
9.08
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTCACCTAAGAGGAGGAGGTCAAGATCACGCTCTGGGTCTCGGAAGCGGAAACACAGAAAACGCTCAAGGTCTCGGTCAAGGGACCGAAAGAGGAAGTCCTCCCGTTCTTATTCCAGTGAGCGAAGAGCACGGGAGAGAGAAAAAGACCGGCAGAAAAAAGGGCTTCCTCCAATCCGCTCGAGGGTTCTCAGTG
Seq A exon
TTTGCAGCACTACTCTATGGGTTGGTCAAGTGGACAAGAAAGCCACCCAACAGGATCTCACAAACCTCTTCGAAGAGTTTGGCCAGATTGAATCTATCAAT
Seq C2 exon
ATGATTCCTCCCAGAGGCTGCGCTTACATCTGTATGGTCCATCGTCAGGACGCATATCGGGCTCTTCAAAAGCTGAGCACCGGCTCTTACAAAATTGGTTCAAAGGTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'11-17,'11-14,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(46.4=100)
A:
PF064956=Transformer=PD(21.4=88.2),PF0007617=RRM_1=PU(41.8=82.4)
C2:
PF0007617=RRM_1=FE(55.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGATCACGCTCTGGGTCT
R:
CCGGTGCTCAGCTTTTGAAGA
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]