RnoEX6000744 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44077425-44083442:+
Coord C1 exon
chr1:44077425-44077618
Coord A exon
chr1:44082793-44082893
Coord C2 exon
chr1:44083329-44083442
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTGTCCTGACAGTAT
3' ss Score
9.35
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTCACCAAGAAAACGGAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAGCATAGGAAGAGGTCTCGCTCCCGCTCCAGAGAGAGAAAGAGAAAATCCTCACGTTCCTATTCAAGTGAACGCAGAGCCAGGGAAAGGGAGAAAGAACGCCAAAAAAAGGGCTTGCCTCCTGTCAGATCGAAAACGCTAAGTG
Seq A exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAGTTTGGGCAAATCGAATCCATTAAT
Seq C2 exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGTATGGTTCATCGACAAGATTCATTTCGGGCTCTCCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF086487=DUF1777=FE(68.4=100)
A:
PF086487=DUF1777=PD(15.8=44.1),PF0007617=RRM_1=PU(41.8=82.4)
C2:
PF0007617=RRM_1=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAACGGAGGTCCAGGTCA
R:
TTCTGGAGAGCCCGAAATGAA
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]