GgaEX1050994 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52246046-52250194:+
Coord C1 exon
chr3:52246046-52246239
Coord A exon
chr3:52248157-52248257
Coord C2 exon
chr3:52250081-52250194
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATGAATGTTTCTCTTGACAGTTT
3' ss Score
9.1
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTCACCAAGAAAACGAAGGTCTAGATCACGATCTGGTTCTCGTAAGCGTAAACACAGAAAACGTTCACGCTCAAGATCAAGAGAAAGGAAGAGAAAGTCATCTCGGTCCTACTCCAGTGAAAGAAGGGCTAGGGAAAGGGAAAAAGAACGTCAGAAAAAGGGATTGCCTCCAATACGGTCAAAAACACTAAGTG
Seq A exon
TTTGCAGCACTACTCTTTGGGTAGGCCAAGTAGACAAGAAGGCTACACAGCAAGATTTGACCAACTTATTTGAAGAATTTGGACAAATAGAATCTATTAAT
Seq C2 exon
ATGATTCCCCCAAGAGGTTGTGCGTATGTCTGCATGGTTCATAGACAAGATGCATATCGTGCTCTTCAGAAGCTTAGTTCTGGGTCCTACAAAATCGGATCTAAAATTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'14-21,'14-20,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(41.8=82.4)
C2:
PF0007617=RRM_1=FE(55.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCTGGTTCTCGTAAGCGT
R:
AGGACCCAGAACTAAGCTTCTGA
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]