BtaEX6050097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92855320-92860276:+
Coord C1 exon
chr9:92855320-92855513
Coord A exon
chr9:92857662-92857762
Coord C2 exon
chr9:92860163-92860276
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTCTGTCTTGGCAGTAT
3' ss Score
8.34
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGATCTGGTTCTCGAAAGCGTAAGCACAGAAAGCGATCACGCTCCCGCTCTAGAGAAAGAAAAAGGAAATCATCACGTTCATACTCAAGTGAAAGGAGAGCTAGAGAAAGGGAGAAAGAACGGCAGAAGAAGGGATTACCTCCAATTAGATCTAAAACATTAAGTG
Seq A exon
TATGCAGTACTACTCTGTGGGTCGGTCAGGTGGACAAGAAGGCAACACAGCAGGATTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAGTCCATTAAT
Seq C2 exon
ATGATTCCTCCCAGAGGCTGTGCGTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTTAGTTCCGGCTCGTATAAAATTGGATCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(46.1=100)
A:
PF064956=Transformer=FE(23.4=100),PF0007617=RRM_1=PU(41.8=82.4)
C2:
PF064956=Transformer=PD(7.1=26.3),PF0007617=RRM_1=FE(55.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCTGGTTCTCGAAAGCGT
R:
ACGAGCCGGAACTAAGTTTCTG
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]