MmuEX6074963 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3177093-3178348:+
Coord C1 exon
chr17:3177093-3177224
Coord A exon
chr17:3177611-3177723
Coord C2 exon
chr17:3178155-3178348
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCTTACCTTTGCCTTTCAAGGAT
3' ss Score
9.31
5' ss Seq
AAGGTTCTA
5' ss Score
1
Exon sequences
Seq C1 exon
GTAACTCCTCAAGATAGCCAGGAGGGGACATTTGGGTCTGAGCACTCAGCTTCTCCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTAGATGATTCCATAGACATTCAGCAACAG
Seq A exon
GATATGGATATTGATGAAGGGCAAGATGTTGTTGAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACGATCTCGATCAAG
Seq C2 exon
GTCACCAAGAAAACGAAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAGCACAGGAAGCGGTCTCGGTCCCACTCGAGAGAGAAAAAGAGAAAAGCCTCACGCTCCTACTCCAGTGAGCGCAGAGCCAGGGAAAGGGAGAAAGAGCGCCAGAAAAAGGGCTTGCCTCCTGTCAGGTCAAAAACACTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'18-24,'18-23,19-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
PF086487=DUF1777=PU(15.3=39.5)
C2:
PF086487=DUF1777=FE(66.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATAGCCAGGAGGGGACA
R:
TCACTGGAGTAGGAGCGTGAG
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: