GgaEX1050992 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52245173-52246239:+
Coord C1 exon
chr3:52245173-52245304
Coord A exon
chr3:52245463-52245575
Coord C2 exon
chr3:52246046-52246239
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTACTATGTCTCATCTCAGGAT
3' ss Score
7.43
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GCAAGCCCTGAGGAAAATCAGGAAGGGAATTTTGGTTCAGAGCACTCTGCATCACCATCACAAGGGAGCAGTCAACAGCAGTTTTTAGAAGCAGAAACAAATGTAGATGATTCAATGGATATTCAACAACAG
Seq A exon
GATATGGACATAGATGAAGGACAGGATGTTGCTGAAGAAGAGATTTTTGAACAAGAAGAAAAGAAATCTGCTGTTCGTTCAAGATCAAGAACGCGTTCAAGATCTCGTTCAAG
Seq C2 exon
GTCACCAAGAAAACGAAGGTCTAGATCACGATCTGGTTCTCGTAAGCGTAAACACAGAAAACGTTCACGCTCAAGATCAAGAGAAAGGAAGAGAAAGTCATCTCGGTCCTACTCCAGTGAAAGAAGGGCTAGGGAAAGGGAAAAAGAACGTCAGAAAAAGGGATTGCCTCCAATACGGTCAAAAACACTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'12-19,'12-17,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCACAAGGGAGCAGTC
R:
AGGCAATCCCTTTTTCTGACGT
Band lengths:
249-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]