HsaEX6050108 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155129204-155131342:+
Coord C1 exon
chr6:155129204-155129335
Coord A exon
chr6:155129820-155129932
Coord C2 exon
chr6:155131149-155131342
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTTGACTTTCAAGGAT
3' ss Score
8.84
5' ss Seq
AAGGTTCTA
5' ss Score
1
Exon sequences
Seq C1 exon
GCCACTCCTCAGGATAGTCAGGAAGGAACCTTTGGGTCAGAGCATTCAGCGTCACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCTGAAGTCAATTTGGATGATTCCATAGATATTCAGCAACAG
Seq A exon
GATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAGAAAGTGGCGGTTCGCTCAAGATCAAGAACACATTCACGATCTCGTTCAAG
Seq C2 exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGGTCTGGCTCTAGAAAGCGTAAACACAGAAAGCGATCACGCTCCCGCTCAAGAGAAAGAAAGAGGAAATCATCACGGTCGTATTCAAGTGAAAGGAGAGCCAGAGAAAGGGAGAAAGAACGACAGAAAAAGGGATTACCTCCAATTAGATCTAAAACACTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
PF064956=Transformer=PU(19.7=71.1),PF086487=DUF1777=PU(14.9=36.8)
C2:
PF064956=Transformer=FE(47.4=100),PF086487=DUF1777=FE(69.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTTTGGGTCAGAGCA
R:
CTCCCTTTCTCTGGCTCTCCT
Band lengths:
251-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)