RnoEX0078263 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44075887-44077618:+
Coord C1 exon
chr1:44075887-44076018
Coord A exon
chr1:44076420-44076532
Coord C2 exon
chr1:44077425-44077618
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTGAACTTTGCCTTCCAAGGAT
3' ss Score
5.77
5' ss Seq
AAGGTTCTA
5' ss Score
1
Exon sequences
Seq C1 exon
GTAACTCCTCAGGACAGCCAGGAGGGAGCATTTGGCTCTGAGCACTCAGCTTCACCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTAGATGATTCCATAGACATTCAGCAACAG
Seq A exon
GATATGGATATTGATGAAGGGCAAGATGTTGTTGAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACGATCTCGATCAAG
Seq C2 exon
GTCACCAAGAAAACGGAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAGCATAGGAAGAGGTCTCGCTCCCGCTCCAGAGAGAGAAAGAGAAAATCCTCACGTTCCTATTCAAGTGAACGCAGAGCCAGGGAAAGGGAGAAAGAACGCCAAAAAAAGGGCTTGCCTCCTGTCAGATCGAAAACGCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'20-18,'20-17,21-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
PF086487=DUF1777=PU(14.7=36.8)
C2:
PF086487=DUF1777=FE(68.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGGAGTAGCCAACAGC
R:
GACAGGAGGCAAGCCCTTTTT
Band lengths:
249-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]