BtaEX6050099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92853408-92855513:+
Coord C1 exon
chr9:92853408-92853539
Coord A exon
chr9:92853797-92853909
Coord C2 exon
chr9:92855320-92855513
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCTTTGACTTTCAAGGAT
3' ss Score
8.57
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
Exon sequences
Seq C1 exon
GCAACTCCTCAGGATAGTCAAGAAGGAACATTTGGGTCAGAACATTCTGCATCACCGTCACAAGGGAGCAGTCAGCAGCATTTCCTTGAACCTGAAGCAAATTTGGATGATTCTATAGATATTCAGCAACAG
Seq A exon
GATATGGATATAGATGAAGTGCAAGATGCAGTGGAAGAGGAGATCTTTGAACAGGAAGCAAAGAAAGTGGCTGTTCGTTCAAGATCAAGAACACACTCCCGATCTCGTTCAAG
Seq C2 exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGATCTGGTTCTCGAAAGCGTAAGCACAGAAAGCGATCACGCTCCCGCTCTAGAGAAAGAAAAAGGAAATCATCACGTTCATACTCAAGTGAAAGGAGAGCTAGAGAAAGGGAGAAAGAACGGCAGAAGAAGGGATTACCTCCAATTAGATCTAAAACATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'16-14,'16-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.917
Domain overlap (PFAM):
C1:
PF100254=DUF2267=FE(30.7=100)
A:
PF100254=DUF2267=PD(17.9=65.8),PF086487=DUF1777=PU(14.6=36.8)
C2:
PF064956=Transformer=FE(46.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCATCACCGTCACAAGG
R:
TCTTCTGCCGTTCTTTCTCCC
Band lengths:
246-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]