DreEX6056184 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48853649-48854304:+
Coord C1 exon
chr17:48853649-48853780
Coord A exon
chr17:48853915-48854024
Coord C2 exon
chr17:48854111-48854304
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCATGTGTGTTTTTTGCAGGAC
3' ss Score
11.32
5' ss Seq
TAGGTTGGT
5' ss Score
4.39
Exon sequences
Seq C1 exon
TCTATGAGCATGGAGAGCCAGGACGCTATTTTTGGCACTGAAAATTCTGCCCCATCTGGCCAGAGCAGCGCCCCGTCACAGCACCAAGTTCAAGAATCAAAAATGGATGATTCCATGGACAACCAACAACAG
Seq A exon
GACATGGATATTGATGAGGGACAGGATGTGGTCGATGAGGAGCTCTTTGAGACGGATGAGAAGAAAACCAGCAGCACCCGTTCAAGGACGCGCTCAAGATCCCGCTCTAG
Seq C2 exon
GTCACCTAAGAGGAGGAGGTCAAGATCACGCTCTGGGTCTCGGAAGCGGAAACACAGAAAACGCTCAAGGTCTCGGTCAAGGGACCGAAAGAGGAAGTCCTCCCGTTCTTATTCCAGTGAGCGAAGAGCACGGGAGAGAGAAAAAGACCGGCAGAAAAAAGGGCTTCCTCCAATCCGCTCGAGGGTTCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
PF064956=Transformer=PU(5.0=15.9)
A:
PF064956=Transformer=FE(25.7=100)
C2:
PF064956=Transformer=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCCAGGACGCTATTT
R:
GTGCTCTTCGCTCACTGGAAT
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]