MmuEX6089001 @ mm10
Exon Skipping
Gene
ENSMUSG00000038976 | Ppp1r9b
Description
protein phosphatase 1, regulatory subunit 9B [Source:MGI Symbol;Acc:MGI:2387581]
Coordinates
chr11:95001842-95004790:+
Coord C1 exon
chr11:95001842-95001994
Coord A exon
chr11:95002079-95002132
Coord C2 exon
chr11:95004561-95004790
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGCCACCCTCTGTCCGCAGCTC
3' ss Score
10.82
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACAGGAGAGTATGCCACCGACGAAGATGAAGAACTGAGCCCAACGTTCCCAGGGGGTGAAATGGCCATTGAGGTGTTTGAACTAGCAGAGAACGAGGATGCGCTGTCCCCCGTGGAGATGGAGCCCGAAAAGCTGGTGCACAAGTTCAAGGAG
Seq A exon
CTCCAGATCAAGCATGCTGTCACTGAAGCGGAAATCCAGCAGCTGAAACGGAAG
Seq C2 exon
TTGCAGAGTCTGGAGCAGGAGAAAGGGCGCTGGCGGGTAGAGAAGGCCCAGCTGGAGCAGAGCGTGGAGGAGAATAAGGAGCGGATGGAGAAGCTAGAGGGCTACTGGGGTGAGGCCCAGAGCCTGTGCCAGGCTGTGGATGAGCACCTGCGGGAGACCCAGGCCCAGTATCAGGCCCTGGAGCGCAAGTACAGCAAGGCCAAGCGTCTCATCAAGGACTACCAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038976-'19-18,'19-14,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=0.056 C2=0.156
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PU(27.3=47.1)
A:
PF104734=CENP-F_leu_zip=FE(19.3=100)
C2:
PF104734=CENP-F_leu_zip=PD(50.0=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGATGGAGCCCGAAAAG
R:
TCTAGCTTCTCCATCCGCTCC
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types