DreEX6016340 @ danRer10
Exon Skipping
Gene
ENSDARG00000079366 | ppp1r9ba
Description
protein phosphatase 1, regulatory subunit 9Ba [Source:ZFIN;Acc:ZDB-GENE-091006-1]
Coordinates
chr3:23185300-23188041:+
Coord C1 exon
chr3:23185300-23185443
Coord A exon
chr3:23187616-23187669
Coord C2 exon
chr3:23187812-23188041
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTCTGTGTCTCCAGCTC
3' ss Score
8.21
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACGGGTGAATGTGCCACCGATGAAGAGGAAGAGATGAGCCCCATGTTTCCTAATGCCATTGAGGTGTTTGATCTGGCAGAGAATGAAGACATGCTCTCTCCTGTGGAGATGGACCCAGAGAAACTGGCTCACAAGTTTAAGGAG
Seq A exon
CTCCAGATCAAACATGCTGTGACTCAGGCTGAGATCCAACAGCTCAAGAGGAAG
Seq C2 exon
CTGGCTCACGCCGAACAGGATAAGCTGCGCTGGAGGATGGAGAGGGCTCAGCTGGAGCAGACGGTGAGGGAGAATAAGGAGCGCATGGAGAAGTTGGAGGGTTATTGGATGGAGGCTCAGAGCTTATGCCAGGCAGTTGATGAGCACCTGAAGGAGACGCAGACCCAGTACCAGGCACTGGAGCGCAAGTACAGCAAAGCCAAACGCCTCATCAAAGAGTACCAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079366-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.222 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCATGTTTCCTAATGCCA
R:
GCTTATCCTGTTCGGCGTGAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]