HsaEX1029175 @ hg38
Exon Skipping
Gene
ENSG00000108819 | PPP1R9B
Description
protein phosphatase 1 regulatory subunit 9B [Source:HGNC Symbol;Acc:HGNC:9298]
Coordinates
chr17:50135968-50139581:-
Coord C1 exon
chr17:50139429-50139581
Coord A exon
chr17:50139263-50139316
Coord C2 exon
chr17:50135968-50136197
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCTCTGCCCAACAGCTC
3' ss Score
8.88
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACGGGAGAGTATGCCACTGACGAGGATGAGGAGCTGAGCCCCACGTTCCCGGGTGGTGAGATGGCCATCGAGGTGTTTGAGCTAGCGGAGAACGAGGATGCACTGTCCCCTGTGGACATGGAGCCCGAGAAGCTGGTGCACAAGTTCAAGGAG
Seq A exon
CTCCAGATCAAGCATGCGGTCACTGAGGCAGAGATCCAGCAGCTGAAAAGAAAG
Seq C2 exon
CTGCAGAGCCTGGAGCAGGAGAAGGGGCGCTGGCGGGTGGAGAAGGCGCAGTTGGAGCAGAGTGTGGAGGAGAACAAGGAGCGCATGGAGAAACTGGAAGGCTACTGGGGTGAGGCCCAGAGCCTGTGCCAGGCTGTGGACGAGCACCTGCGGGAGACTCAGGCGCAGTACCAGGCCCTGGAGCGCAAGTACAGCAAGGCCAAGCGCCTCATCAAGGACTACCAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108819-'27-22,'27-19,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=0.056 C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGCACAAGTTCAAGGA
R:
ACCCCAGTAGCCTTCCAGTTT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains