GgaEX0014353 @ galGal3
Exon Skipping
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23775098-23783412:+
Coord C1 exon
chr2:23775098-23775253
Coord A exon
chr2:23780747-23780800
Coord C2 exon
chr2:23783183-23783412
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTATATTTTCAATTTTAGTTG
3' ss Score
9.96
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACAGGGGAATATGCTACAGATGAAGAAGATGATGACATGGGACCTGTCCTTCCTGGAGGTGACATAGCTATTGAAGTGTTCGATCTTCCTGAGAATGACGACATGTTCTCCCCCAGTGATGTGGACACCAGCAAGCTCGCTCACAAGTTCAAAGAG
Seq A exon
TTGCAAATCAAACATGCAGTTACAGAAGCTGAAATTCAGAAGCTGAAGACGAAG
Seq C2 exon
CTACAGGCTGCTGAGAATGAGAAGGTGAGGTGGGAACTGGAGAAGACCCAACTGCAGCAGAACATTGAGGAGAATAAGGAGAGGATGATGAAATTAGAGAGTTACTGGATTGAGGCCCAAACCCTGTGTCATACGGTGAACGAGCACCTGAAGGAGACACAAAGCCAGTATCAAGCTCTGGAGAAGAAATATAACAAGGCAAAGAAGTTAATCAAGGATTTCCAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.111 C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGACATGTTCTCCCCCA
R:
TCCTCAATGTTCTGCTGCAGT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]