RnoEX0068935 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30182382-30197204:+
Coord C1 exon
chr4:30182382-30182537
Coord A exon
chr4:30194386-30194439
Coord C2 exon
chr4:30196975-30197204
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCAATTTTCAGTTG
3' ss Score
10.74
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACCGGAGAATATGCCACTGATGAAGAAGAAGATGAGGTTGGACCCATTCTTCCTGGTGGTGACATGGCCATTGAAGTCTTCGAGCTCCCTGAGAATGAGGACATGTTTTCCCCATCTGACTTGGATACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq A exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
Seq C2 exon
CTGCAAGCAGCAGAGAATGAGAAAGTAAGGTGGGAACTAGAAAAGAACCAACTGCAGCAGAATATTGAGGAGAATAAAGAAAGGATGGTAAAGCTGGAGAGCTACTGGATCGAGGCGCAGACATTATGTCACACCGTGAACGAGCATCTCAAAGAGACCCAAAGCCAGTATCAGGCCTTGGAAAAGAAGTACAACAAAGCCAAGAAGTTGATCAAGGATTTTCAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.599 A=0.056 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCAAGCTCAGTCACAAGT
R:
CCTCGATCCAGTAGCTCTCCA
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]