DreEX6074058 @ danRer10
Exon Skipping
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41548684-41555045:+
Coord C1 exon
chr19:41548684-41548836
Coord A exon
chr19:41552028-41552081
Coord C2 exon
chr19:41554816-41555045
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTGCCTCTTTGTGTTTTCAGCTG
3' ss Score
10.46
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACTGGAGAATACGCCACCGATGAGGAGGAGGAGGCTGGACAGACGGGAACAGACAGAGATGTGGCCATTGAGGTTTTCGATTTACCCGAAAACGAGGACATCATCTCGCCGTCGGAAATGGATGCCACCAAACTGTTCCAGAAGTTTCGGGAG
Seq A exon
CTGCAGATTAAACACACTGTCACTGAAGCCGAGATCCAGAAACTCAAGAGCAAG
Seq C2 exon
CTGGCCGCAGTGGAGAAAGAAAAGGCTCGCTGGGAAAGAGAGAAGACCCAGCTCAAGCAAAGCATCGAGGACAATAAAGAGAGGATGCTAAAACTGGAGAGCTACTGGATTGAGGCTCAGACGCTCTGCCACACCGTCAATGAGCATCTGAAGGAGGCCCAGAGTCAATATCAGGCCCTGGAGAAGAAGTACAACAAGGCCAAAAAGCTCATCAAGGACTTCCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGACAGAGATGTGGCC
R:
CCCAGCGAGCCTTTTCTTTCT
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]