BtaEX6026284 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12308313-12324825:+
Coord C1 exon
chr4:12308313-12308468
Coord A exon
chr4:12321961-12322014
Coord C2 exon
chr4:12324596-12324825
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTTCCATTTTCAGTTG
3' ss Score
11.83
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACAGGAGAATATGCCACAGATGAAGAGGAGGACGACGTAGGGCCTGTTCTTCCTGGAGGCGACATGGCCATCGAAGTCTTCGAGCTGCCTGAGAACGAGGACGTGTTTTCCCCCTCAGACCTGGATACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq A exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
Seq C2 exon
CTGCAAGCTGCAGAAAATGAGAAAGTGAGGTGGGAACTAGAAAAAACTCAACTTCAACAGAATATAGAAGAGAATAAAGAAAGAATGATGAAGTTGGAGAGCTACTGGATTGAGGCCCAAACATTATGCCACACAGTGAACGAGCACCTCAAAGAGACTCAAAGCCAGTATCAGGCCTTGGAAAAGAAGTACAACAAGGCAAAGAAACTGATCAAGGATTTTCAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.056 C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCAAGCTCAGTCACAAGT
R:
GGGCCTCAATCCAGTAGCTCT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]